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Nuts & Twigs » Recipes » Breakfast

Vegan Lemon Poppy Seed Cupcakes

Regina Pearce head shot.
Modified: Feb 26, 2026 · Published: May 14, 2024 by Regi Pearce · This post may contain affiliate links ·

Brighten your day with these vegan lemon poppy seed cupcakes! They're the perfect treat: zesty, fluffy, and delightfully dotted with poppy seeds.

Jump to Recipe Jump to Video Pin Recipe
close up side view of vegan lemon poppyseed cupcakes on a cooling rack.

I love these treats but must keep my baking days in check. Why? Because these cupcakes are like a snacking trap - I start with "just tasting" the batter (it's so good!), snag a cupcake fresh from the oven (it's so good!), and grab several more on multiple kitchen drive-bys (they're still good!).

Next thing you know, I'm in a full-blown sugar coma, swearing off sweets while secretly planning my next batch. They're dangerously delicious, folks!

I don't find icing these treats necessary, but for my kids and any of you who dig it, I've included a delicious, super simple glaze option in the recipe card, or you can use a Vegan Lemon Cream Cheese Frosting.

Glaze or no glaze had me debating: should they be called vegan lemon poppy seed muffins or cupcakes? Skipping the glaze feels very muffin-esque, but I've dubbed them cupcakes because of their sweet, light, and cakey vibe. Frosting or not, call them what you like - vegan muffins or vegan cupcakes - they're scrumptiously tasty either way!

If you're looking for muffins, try these treats Savory Vegan Zucchini Muffins. For other delicious vegan desserts, take a look at Vegan Chocolate Pudding Parfait or Vegan Chocolate Chip Skillet Cookie.

Jump to:
  • Why I Love This Recipe
  • Recipe Ingredients
  • Additions and Variations
  • How To Make Vegan Lemon Poppyseed Cupcakes
  • Recipe Tips
  • Serving Suggestions
  • Storage and Reheating
  • Why Didn't My Cupcakes Rise?
  • FAQS
  • More Vegan Recipes To Try
  • Recipe Card
  • Comments

Why I Love This Recipe

  • Each bite bursts with fresh lemony zest.
  • These cupcakes are moist.
  • Adds a delightful texture with each bite and makes it look so pretty.
  • No dairy or eggs, ideal for everyone to enjoy.

Recipe Ingredients

You'll need the following ingredients to make these amazing Vegan lemon poppy mini cakes. See the recipe card for quantities.

top view of ingredients for vegan lemon poppy seed cupcakes in bowls
  • Flour: I typically use all-purpose flour for vegan lemon poppy seed cupcakes. Sifting it with the baking powder aerates the flour making the cupcakes lighter and finer. But it's not absolutely necessary. Even without sifting, the cupcakes turn out wonderfully.
  • Lemon Juice - This recipe is loaded with lemon juice, and there's no cutting corners here! It's crucial for achieving that vibrant lemon flavor, and skipping it would throw off the whole baking chemistry.
  • Soy Milk - I have only used soy milk and oat milk to make these cupcakes, but almond milk should work fine too.

Additions and Variations

  • Use the zest and juice from an orange instead of a lemon for variety. They are delicious!
  • Top with fresh or compote-style berries like raspberries or blueberries for added sweetness and color.
  • Garnish with a dollop of coconut whipped cream.

How To Make Vegan Lemon Poppyseed Cupcakes

Here are some pictures showing what you'll be doing. These cupcakes come together quickly. Check out the recipe card for details.

top view of a hand holding a hand mixer mixing vegan butter.

Step 1: Set oven to 350°F and line a muffin tin with cupcake liners. In a large bowl, mix softened butter until smooth, then add sugar until incorporated well. Scrape the bowl occasionally. Use an electric hand mixer for best results.

top view adding ingredients to a bowl for cupcakes.

Step 2: Add the wet ingredients - lemon juice, vanilla extract, and zest, and mix until well combined with the sugar and butter mixture.

top view of a hand holding a strainer while sifting flour into the bowl for the cupcake batter.

Step 3: Sift the flour and baking soda directly into the bowl with the sugar mixture.

top view of bowl with dry ingredients for the cupcakes - salt, poppyseeds, baking powder, and flour.

Step 4: Then, add the remaining dry ingredients - poppy seeds and salt.

top view of a hand holding a bowl of milk and pouring it into the cupcake batter bowl.

Step 5: Gradually pour in milk while mixing gently.

vegan lemon poppyseed cupcakes before baking in the muffin tin; top view

Step 6: Distribute cupcake batter evenly in liners, filling each ⅔ full.

side angled view of a baking tray with cupcakes. A person is reaching for a cupcake in the background.

Step 7: Cook for 18-22 minutes; check with a toothpick, making sure it's cooked through.

top view of vegan lemon poppy seed cupcakes on a cooling rack.

Step 8: Let cupcakes cool in the pan for 5 minutes, then move to a wire rack.

icing in a bowl; top view.

Step 9: Make the lemony glaze if using. Mix powdered sugar, lemon juice, and zest.

adding icing to cupcakes; side view.

Step 10: Drizzle the glaze onto the top of the cupcakes and let them cool to harden.

Recipe Tips

  • This is my most important tip, as it can make a dramatic difference. Ensure all ingredients are measured accurately, especially the leavening agents and flour, to achieve the best texture. To accurately measure flour, spoon it into a measuring cup and level it off with a knife, avoiding packing it down to prevent adding too much to your recipe.
  • Bring ingredients like non-dairy milk and vegan butter to room temperature for better mixing.
  • Use a scoop to fill cupcake liners evenly to ensure uniform baking.
  • Bake in the center of the oven to promote even cooking.
  • Allow cupcakes to cool completely before frosting to prevent the frosting from melting.

Serving Suggestions

I like the cupcakes with no icing, but vegan lemon poppy seed cupcakes are versatile and delicious, making them perfect for various serving options:

  • Drizzle a simple light lemon glaze on top for extra zest. See the recipe card for directions.
  • Top with fresh berries like raspberries or blueberries for a colorful, tasty addition.
  • Add a dollop of dairy-free whipped cream to each cupcake for a classic touch.
  • Serve alongside other vegan desserts like Vegan Double Chocolate Crinkle Cookies or Vegan Coffee Cake Cookies for a diverse dessert option at gatherings.
side angled view of vegan lemon poppyseed cupcakes in a baking tin.

Storage and Reheating

  • Storage - Keep in an airtight container for 3-4 days. I don't refrigerate them. If you refrigerate them, they get firmer from the cold.
  • Reheating - Warm them in a microwave for 10-15 seconds until they are warm and soft.
side view of cupcakes on a table. One is broken up in half.

Why Didn't My Cupcakes Rise?

Here are some reasons that may be causing flat cupcakes:

  • Expired Leavening Agents: Old baking powder can lose its effectiveness, leading to flat cupcakes. To learn more about leavening agents, visit Guide to Baking Soda And Baking Powder.
  • Overmixing the Batter: This can deflate the batter, causing it not to rise properly in the oven.
  • Incorrect Oven Temperature: Too low or too high an oven temperature can affect how the cupcakes rise.
  • Opening the Oven Too Early: This lets heat escape and can cause cupcakes to collapse.
  • Altitude: Are you above 3000 feet? I've made these at both sea level in Miami and the mountains of Colorado, and the altitude affects the rise.

High-Altitude Instructions
If you live at high altitudes and aim for domed cupcakes, crank your oven up to 425°F (220°C) and bake for slightly less time. You will also need to decrease the baking powder to 1 teaspoon. Without this heat boost and reduced baking powder, your cupcakes will bake up flat-topped but still taste great! Watch them so they don't burn.

FAQS

Can I use a different type of flour in lemon poppyseed cupcakes?

I've only tried making these vegan cupcakes with all-purpose flour, so I can't guarantee results with other types.

What can I substitute for sugar in cupcakes?

You can use coconut sugar but the cupcakes will come out a darker color.

More Vegan Recipes To Try

  • vegan chocolate chip energy balls on a baking tray
    Vegan Chocolate Chip Energy Balls
  • side view of a slice of vegan chocolate pie on a plate.
    Vegan No-Bake Chocolate Pie
  • side view of Vegan Chocolate Pudding Parfait in a clear glass.
    Vegan Chocolate Pudding Parfait 
  • easy vegan trail mix with unreal chocolate gems in a glass container; top view
    Easy Vegan Trail Mix

Got a minute? Dive into the comments and rate these vegan lemon poppy seed cupcakes to let me know how it turned out for you. Was it a hit? Any twists you added? I want to know if my directions were any good. Follow me on Pinterest, Instagram, Facebook, and YouTube for inspiration.

Recipe Card

top view of vegan lemon poppy seed cupcakes with frosting.

Vegan Lemon Poppy Seed Cupcakes

Regi Pearce
Brighten your day with these vegan lemon poppy seed cupcakes! They're the perfect treat: zesty, fluffy, and delightfully dotted with poppy seeds. Indulge in the tangy sweetness-no dairy, no eggs, just pure plant-based pleasure!
5 from 1 vote
Print Recipe Pin Recipe
Prep Time 5 minutes mins
Cook Time 20 minutes mins
Total Time 25 minutes mins
Course dessert
Cuisine American
Servings 12 cupcakes
Calories 297 kcal

Equipment

  • 12 cup muffin tin
  • Microplane Zester

Ingredients
  

  • ½ cup vegan butter softened
  • 1 ¼ cups granulated sugar 285 grams
  • zest of 3 lemons
  • ⅓ cup lemon juice juice of two large lemons
  • 1 teaspoon vanilla
  • 2 ¾ cups all-purpose flour sifted 380 grams
  • 2 teaspoons baking powder
  • 1-2 tablespoons poppy seeds
  • 1 teaspoon salt
  • 1 ¼ cups soy milk

Optional Lemon Glaze

  • 1 cup powdered sugar
  • 2-3 tablespoons lemon juice freshly squeezed
  • 1 teaspoon lemon zest
InstacartGet Recipe Ingredients

Instructions
 

  • Prepare: Preheat your oven to 350°F (°175C). Line a muffin tin with cupcake liners.
  • Mix: Mix the softened butter with a hand mixer on medium speed. Then add the sugar and mix again until combined. Use a rubber spatula to scrape the side of the bowl once or twice while mixing.
  • Combine: Add the lemon juice, vanilla extract, and the zest. Mix with a large spoon until combined well.
  • Sift Flour: Sift the flour into the butter and sugar mixture. Then, add the baking powder, poppy seeds, and salt.
  • Mix Gently: Begin mixing with a spatula, folding the flour gently into the mixture. While mixing, add the milk. Do not overmix, or it will make the cupcake dense.
  • Fill the Cupcake Liners: Divide the batter evenly among the cupcake liners, filling each about ⅔ full.
  • Bake: Bake for 18-22 minutes, or until a toothpick inserted into the center of a cupcake comes out clean.
  • Cool: Allow the cupcakes to cool in the pan for 5 minutes, then transfer them to a wire rack to cool completely.
  • Glaze: (Optional) If using, combine the glaze ingredients in a bowl until smooth. Drizzle over the cooled cupcakes. Top with more poppy seeds and some more lemon zest for a pretty presentation.

Video

Notes

For domed cupcakes at high altitudes, heat your oven to 425°F (220°C), use only 1 teaspoon of baking powder, and reduce baking time by a few minutes. Watch carefully so they don't burn.
For best texture, measure ingredients precisely, especially flour and leavening agents. To measure flour correctly, spoon it into a measuring cup and level it off with a knife without packing it down to avoid adding too much.
Nutritional information is only an estimate. It does not include the glaze.

Nutrition

Calories: 297kcal | Carbohydrates: 55g | Protein: 4g | Fat: 7g | Saturated Fat: 2g | Sodium: 339mg | Fiber: 1g | Sugar: 32g | Calcium: 90mg | Iron: 2mg
Keywords beginner friendly, budget friendly, low calorie, nut free, oil free
Tried this recipe?Please consider Leaving a Review!

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Reader Interactions

Comments

  1. Maddie says

    May 15, 2024 at 8:21 am

    5 stars
    These are so good. I made them last night, and we couldn't stop eating them. No kidding, the batter was delicious!

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Regina Pearce headshot.
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I'm Regi.

Head nut, chief twig, and creator of Nuts & Twigs. Here, you can expect delicious vegan recipes that make you realize that a life without cheese is not only possible but also worth living.

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